J3_1VX3_020

3D structure

PDB id

1VX3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2. This entry contains the large subunit ribosomal RNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UCGGUUG*CCUUCGUCCU*GUCACGCACGCCGUUCGUGG

Length

37 nucleotides

Bulged bases

1VX3|1|5|C|4883, 1VX3|1|5|C|4937, 1VX3|1|5|C|4939, 1VX3|1|5|C|4944, 1VX3|1|5|G|4945, 1VX3|1|5|G|4951

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1VX3|1|5|U|4748
1VX3|1|5|C|4749
1VX3|1|5|G|4750
1VX3|1|5|G|4751
1VX3|1|5|U|4752
1VX3|1|5|U|4753
1VX3|1|5|G|4754
*
1VX3|1|5|C|4879
1VX3|1|5|C|4880
1VX3|1|5|U|4881
1VX3|1|5|U|4882
1VX3|1|5|C|4883
1VX3|1|5|G|4884
1VX3|1|5|U|4885
1VX3|1|5|C|4886
1VX3|1|5|C|4887
1VX3|1|5|U|4888
*
1VX3|1|5|G|4931
1VX3|1|5|U|4932
1VX3|1|5|C|4933
1VX3|1|5|A|4934
1VX3|1|5|C|4935
1VX3|1|5|G|4936
1VX3|1|5|C|4937
1VX3|1|5|A|4938
1VX3|1|5|C|4939
1VX3|1|5|G|4941
1VX3|1|5|C|4942
1VX3|1|5|C|4944
1VX3|1|5|G|4945
1VX3|1|5|U|4946
1VX3|1|5|U|4947
1VX3|1|5|C|4948
1VX3|1|5|G|4949
1VX3|1|5|U|4950
1VX3|1|5|G|4951
1VX3|1|5|G|4952

Current chains

Chain 5

28S ribosomal RNA

Nearby chains