J3_1VX3_021

3D structure

PDB id

1VX3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2. This entry contains the large subunit ribosomal RNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CCAU*GCUUCUGGG*CACAAGGG

Length

21 nucleotides

Bulged bases

1VX3|1|5|C|4990, 1VX3|1|5|A|5061

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1VX3|1|5|C|4969
1VX3|1|5|C|4970
1VX3|1|5|A|4971
1VX3|1|5|U|4972
*
1VX3|1|5|G|4986
1VX3|1|5|C|4987
1VX3|1|5|U|4988
1VX3|1|5|U|4989
1VX3|1|5|C|4990
1VX3|1|5|U|4991
1VX3|1|5|G|4992
1VX3|1|5|G|4993
1VX3|1|5|G|4994
*
1VX3|1|5|C|5057
1VX3|1|5|A|5058
1VX3|1|5|C|5059
1VX3|1|5|A|5060
1VX3|1|5|A|5061
1VX3|1|5|G|5062
1VX3|1|5|G|5063
1VX3|1|5|G|5064

Current chains

Chain 5

28S ribosomal RNA

Nearby chains