J3_1VX3_022

3D structure

PDB id

1VX3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2. This entry contains the large subunit ribosomal RNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UACGGCCAUAC*GG*UGCUGUA

Length

20 nucleotides

Bulged bases

1VX3|1|7|U|12

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1VX3|1|7|U|4
1VX3|1|7|A|5
1VX3|1|7|C|6
1VX3|1|7|G|7
1VX3|1|7|G|8
1VX3|1|7|C|9
1VX3|1|7|C|10
1VX3|1|7|A|11
1VX3|1|7|U|12
1VX3|1|7|A|13
1VX3|1|7|C|14
*
1VX3|1|7|G|65
1VX3|1|7|G|66
*
1VX3|1|7|U|109
1VX3|1|7|G|110
1VX3|1|7|C|111
1VX3|1|7|U|112
1VX3|1|7|G|113
1VX3|1|7|U|114
1VX3|1|7|A|115

Current chains

Chain 7

5S ribosomal RNA

Nearby chains

Chain 5

Large subunit ribosomal RNA; LSU rRNA