J3_1VY4_017

3D structure

PDB id

1VY4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1VY4_017 not in the Motif Atlas

Homologous match to J3_7RQB_005

Geometric discrepancy: 0.0453

The information below is about J3_7RQB_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.4

Basepair signature

cWW-tSH-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

1VY4|1|BA|C|698
1VY4|1|BA|A|699
1VY4|1|BA|G|700
*
1VY4|1|BA|C|732
1VY4|1|BA|G|733
1VY4|1|BA|A|734
1VY4|1|BA|A|735
1VY4|1|BA|C|736
*
1VY4|1|BA|G|760
1VY4|1|BA|A|761
1VY4|1|BA|U|762
1VY4|1|BA|G|763

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain BD

50S ribosomal protein L2