J3_1VY4_052
3D structure
- PDB id
- 1VY4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- CCAUAG*CG*UCG
- Length
- 11 nucleotides
- Bulged bases
- 1VY4|1|DB|U|14, 1VY4|1|DB|C|109
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_1VY4_052 not in the Motif Atlas
- Homologous match to J3_7RQB_015
- Geometric discrepancy: 0.1724
- The information below is about J3_7RQB_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_08462.1
- Basepair signature
- cWW-F-cWW-tSS-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
1VY4|1|DB|C|11
1VY4|1|DB|C|12
1VY4|1|DB|A|13
1VY4|1|DB|U|14
1VY4|1|DB|A|15
1VY4|1|DB|G|16
*
1VY4|1|DB|C|68
1VY4|1|DB|G|69
*
1VY4|1|DB|U|108
1VY4|1|DB|C|109
1VY4|1|DB|G|110
Current chains
- Chain DB
- 5S Ribosomal RNA
Nearby chains
- Chain D0
- 50S ribosomal protein L27
- Chain DA
- Large subunit ribosomal RNA; LSU rRNA
- Chain DS
- 50S ribosomal protein L18
- Chain DZ
- 50S ribosomal protein L25
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