J3_1VY5_025

3D structure

PDB id

1VY5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site.

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

CAC*GGUAAG*CGAGG

Length

14 nucleotides

Bulged bases

1VY5|1|BA|A|2790

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1VY5_025 not in the Motif Atlas

Homologous match to J3_9DFE_018

Geometric discrepancy: 0.1663

The information below is about J3_9DFE_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_24127.1

Basepair signature

cWW-F-cWW-tWH-F-F-tHS-cWW

Number of instances in this motif group

2

Unit IDs

1VY5|1|BA|C|2789
1VY5|1|BA|A|2790
1VY5|1|BA|C|2791
*
1VY5|1|BA|G|2805
1VY5|1|BA|G|2807
1VY5|1|BA|U|2808
1VY5|1|BA|A|2809
1VY5|1|BA|A|2810
1VY5|1|BA|G|2811
*
1VY5|1|BA|C|2889
1VY5|1|BA|G|2891
1VY5|1|BA|A|2892
1VY5|1|BA|G|2893
1VY5|1|BA|G|2894

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain BE

50S ribosomal protein L3