J3_1VY5_036

3D structure

PDB id

1VY5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site.

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

GGAAC*GGUGCCCC*GGGGAGCC

Length

21 nucleotides

Bulged bases

1VY5|1|CA|G|1026

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1VY5|1|CA|G|1002
1VY5|1|CA|G|1003
1VY5|1|CA|A|1004
1VY5|1|CA|A|1005
1VY5|1|CA|C|1006
*
1VY5|1|CA|G|1023
1VY5|1|CA|G|1024
1VY5|1|CA|U|1025
1VY5|1|CA|G|1026
1VY5|1|CA|C|1027
1VY5|1|CA|C|1028
1VY5|1|CA|C|1029
1VY5|1|CA|C|1030
*
1VY5|1|CA|G|1031
1VY5|1|CA|G|1032
1VY5|1|CA|G|1033
1VY5|1|CA|G|1034
1VY5|1|CA|A|1035
1VY5|1|CA|G|1036
1VY5|1|CA|C|1037
1VY5|1|CA|C|1038

Current chains

Chain CA

16S Ribosomal RNA

Nearby chains