J3_1VY5_050

3D structure

PDB id

1VY5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site.

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

CUC*GAGC*GUAGAAG

Length

14 nucleotides

Bulged bases

1VY5|1|DA|G|2334

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1VY5|1|DA|C|2295
1VY5|1|DA|U|2296
1VY5|1|DA|C|2297
*
1VY5|1|DA|G|2321
1VY5|1|DA|A|2322
1VY5|1|DA|G|2323
1VY5|1|DA|C|2324
*
1VY5|1|DA|G|2331
1VY5|1|DA|U|2332
1VY5|1|DA|A|2333
1VY5|1|DA|G|2334
1VY5|1|DA|A|2335
1VY5|1|DA|A|2336
1VY5|1|DA|G|2337

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain CX

Transfer RNA; tRNA

Chain D0

50S ribosomal protein L27

Chain DB

5S ribosomal RNA; 5S rRNA

Chain DG

50S ribosomal protein L5

Chain DS

50S ribosomal protein L18