J3_1VY6_038
3D structure
- PDB id
- 1VY6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Puromycin in the A site and acylated tRNA in the P site.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- CGC*GGAC*GGAG
- Length
- 11 nucleotides
- Bulged bases
- 1VY6|1|CA|A|1183
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_1VY6_038 not in the Motif Atlas
- Homologous match to J3_5J7L_010
- Geometric discrepancy: 0.2473
- The information below is about J3_5J7L_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_82365.4
- Basepair signature
- cWW-F-cWW-cWW-F-F
- Number of instances in this motif group
- 4
Unit IDs
1VY6|1|CA|C|1116
1VY6|1|CA|G|1117
1VY6|1|CA|C|1118
*
1VY6|1|CA|G|1155
1VY6|1|CA|G|1156
1VY6|1|CA|A|1157
1VY6|1|CA|C|1158
*
1VY6|1|CA|G|1181
1VY6|1|CA|G|1182
1VY6|1|CA|A|1183
1VY6|1|CA|G|1184
Current chains
- Chain CA
- 16S Ribosomal RNA
Nearby chains
- Chain CB
- 30S ribosomal protein S2
- Chain CI
- 30S ribosomal protein S9
- Chain CJ
- 30S ribosomal protein S10
- Chain CN
- 30S ribosomal protein S14 type Z
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