J3_1VY6_066

3D structure

PDB id

1VY6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Puromycin in the A site and acylated tRNA in the P site.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GGAAC*GGUGCCC*GGGAGCC

Length

19 nucleotides

Bulged bases

1VY6|1|CA|G|1003

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1VY6|1|CA|G|1002
1VY6|1|CA|G|1003
1VY6|1|CA|A|1004
1VY6|1|CA|A|1005
1VY6|1|CA|C|1006
*
1VY6|1|CA|G|1023
1VY6|1|CA|G|1024
1VY6|1|CA|U|1025
1VY6|1|CA|G|1026
1VY6|1|CA|C|1027
1VY6|1|CA|C|1028
1VY6|1|CA|C|1029
*
1VY6|1|CA|G|1032
1VY6|1|CA|G|1033
1VY6|1|CA|G|1034
1VY6|1|CA|A|1035
1VY6|1|CA|G|1036
1VY6|1|CA|C|1037
1VY6|1|CA|C|1038

Current chains

Chain CA

16S Ribosomal RNA

Nearby chains