J3_1W2B_005

3D structure

PDB id

1W2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Trigger Factor ribosome binding domain in complex with 50S

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CUAAUG*CAUG*CAAG

Length

14 nucleotides

Bulged bases

1W2B|1|0|U|1702

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1W2B_005 not in the Motif Atlas

Homologous match to J3_4V9F_005

Geometric discrepancy: 0.0824

The information below is about J3_4V9F_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.7

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

1W2B|1|0|C|1404
1W2B|1|0|U|1405
1W2B|1|0|A|1406
1W2B|1|0|A|1407
1W2B|1|0|U|1408
1W2B|1|0|G|1409
*
1W2B|1|0|C|1700
1W2B|1|0|A|1701
1W2B|1|0|U|1702
1W2B|1|0|G|1703
*
1W2B|1|0|C|1715
1W2B|1|0|A|1716
1W2B|1|0|A|1717
1W2B|1|0|G|1718

Current chains

Chain 0

23S RRNA

Nearby chains

Chain O

50S RIBOSOMAL PROTEIN L19E