J3_1W2B_021

3D structure

PDB id

1W2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Trigger Factor ribosome binding domain in complex with 50S

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CCACAGC*GCGUUC*GUUCG

Length

18 nucleotides

Bulged bases

1W2B|1|9|C|12

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1W2B|1|9|C|9
1W2B|1|9|C|10
1W2B|1|9|A|11
1W2B|1|9|C|12
1W2B|1|9|A|13
1W2B|1|9|G|14
1W2B|1|9|C|15
*
1W2B|1|9|G|66
1W2B|1|9|C|67
1W2B|1|9|G|68
1W2B|1|9|U|69
1W2B|1|9|U|70
1W2B|1|9|C|71
*
1W2B|1|9|G|110
1W2B|1|9|U|111
1W2B|1|9|U|112
1W2B|1|9|C|113
1W2B|1|9|G|114

Current chains

Chain 9

5S RRNA

Nearby chains

Chain 0

Large subunit ribosomal RNA; LSU rRNA

Chain D

50S RIBOSOMAL PROTEIN L5P HMAL5, HL13, RIBOSOMAL PROTEIN L5

Chain M

50S RIBOSOMAL PROTEIN L18P

Chain P

50S RIBOSOMAL PROTEIN L21E