J3_1XMQ_004
3D structure
- PDB id
- 1XMQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal Structure of t6A37-ASLLysUUU AAA-mRNA Bound to the Decoding Center
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- UUUAAUUC*GAAGAACCUUAC*GGCGA
- Length
- 25 nucleotides
- Bulged bases
- 1XMQ|1|A|A|975, 1XMQ|1|A|G|976, 1XMQ|1|A|A|978
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_1XMQ_004 not in the Motif Atlas
- Homologous match to J3_4LFB_004
- Geometric discrepancy: 0.0615
- The information below is about J3_4LFB_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_88451.1
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
1XMQ|1|A|U|955
1XMQ|1|A|U|956
1XMQ|1|A|U|957
1XMQ|1|A|A|958
1XMQ|1|A|A|959
1XMQ|1|A|U|960
1XMQ|1|A|U|961
1XMQ|1|A|C|962
*
1XMQ|1|A|G|973
1XMQ|1|A|A|974
1XMQ|1|A|A|975
1XMQ|1|A|G|976
1XMQ|1|A|A|977
1XMQ|1|A|A|978
1XMQ|1|A|C|979
1XMQ|1|A|C|980
1XMQ|1|A|U|981
1XMQ|1|A|U|982
1XMQ|1|A|A|983
1XMQ|1|A|C|984
*
1XMQ|1|A|G|1221
1XMQ|1|A|G|1222
1XMQ|1|A|C|1223
1XMQ|1|A|G|1224
1XMQ|1|A|A|1225
Current chains
- Chain A
- 16s ribosomal RNA
Nearby chains
- Chain J
- 30S Ribosomal Protein S10
- Chain M
- 30S Ribosomal Protein S13
- Chain N
- 30S Ribosomal Protein S14
- Chain S
- 30S Ribosomal Protein S19
- Chain X
- Anticodon RNA
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