3D structure

PDB id
1XNQ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of an Inosine-Adenine Wobble Base Pair Complex in the Context of the Decoding Center
Experimental method
X-RAY DIFFRACTION
Resolution
3.05 Å

Loop

Sequence
CGC*GGAC*GGAG
Length
11 nucleotides
Bulged bases
1XNQ|1|A|A|1183
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_1XNQ_008 not in the Motif Atlas
Homologous match to J3_4LFB_008
Geometric discrepancy: 0.1154
The information below is about J3_4LFB_008
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_82365.4
Basepair signature
cWW-F-cWW-cWW-F-F
Number of instances in this motif group
4

Unit IDs

1XNQ|1|A|C|1116
1XNQ|1|A|G|1117
1XNQ|1|A|C|1118
*
1XNQ|1|A|G|1155
1XNQ|1|A|G|1156
1XNQ|1|A|A|1157
1XNQ|1|A|C|1158
*
1XNQ|1|A|G|1181
1XNQ|1|A|G|1182
1XNQ|1|A|A|1183
1XNQ|1|A|G|1184

Current chains

Chain A
16S ribosomal RNA

Nearby chains

Chain B
Ribosomal protein S2
Chain G
Ribosomal protein S7
Chain I
Ribosomal protein S9
Chain J
Ribosomal protein S10
Chain N
Ribosomal protein S14

Coloring options:


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