J3_1Y69_003

3D structure

PDB id

1Y69 (explore in PDB, NAKB, or RNA 3D Hub)

Description

RRF domain I in complex with the 50S ribosomal subunit from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.33 Å

Loop

Sequence

GGA*UUCAAAGAGUG*CUCAC

Length

19 nucleotides

Bulged bases

1Y69|1|0|A|1099, 1Y69|1|0|G|1100

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1Y69|1|0|G|1066
1Y69|1|0|G|1067
1Y69|1|0|A|1068
*
1Y69|1|0|U|1092
1Y69|1|0|U|1093
1Y69|1|0|C|1094
1Y69|1|0|A|1095
1Y69|1|0|A|1096
1Y69|1|0|A|1097
1Y69|1|0|G|1098
1Y69|1|0|A|1099
1Y69|1|0|G|1100
1Y69|1|0|U|1101
1Y69|1|0|G|1102
*
1Y69|1|0|C|1111
1Y69|1|0|U|1112
1Y69|1|0|C|1113
1Y69|1|0|A|1114
1Y69|1|0|C|1115

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain K

50S ribosomal protein L16