J3_1Y69_007

3D structure

PDB id

1Y69 (explore in PDB, NAKB, or RNA 3D Hub)

Description

RRF domain I in complex with the 50S ribosomal subunit from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.33 Å

Loop

Sequence

CUC*GAGC*GUAGAAG

Length

14 nucleotides

Bulged bases

1Y69|1|0|U|2275, 1Y69|1|0|G|2313

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1Y69|1|0|C|2274
1Y69|1|0|U|2275
1Y69|1|0|C|2276
*
1Y69|1|0|G|2300
1Y69|1|0|A|2301
1Y69|1|0|G|2302
1Y69|1|0|C|2303
*
1Y69|1|0|G|2310
1Y69|1|0|U|2311
1Y69|1|0|A|2312
1Y69|1|0|G|2313
1Y69|1|0|A|2314
1Y69|1|0|A|2315
1Y69|1|0|G|2316

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain 9

5S ribosomal RNA; 5S rRNA

Chain U

50S ribosomal protein L27