J3_1Y69_012

3D structure

PDB id

1Y69 (explore in PDB, NAKB, or RNA 3D Hub)

Description

RRF domain I in complex with the 50S ribosomal subunit from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.33 Å

Loop

Sequence

GUGGAUGC*GUGAAAAGAAC*GAGUGAAAGAGAACCUGAAAC

Length

40 nucleotides

Bulged bases

1Y69|1|0|G|510, 1Y69|1|0|G|514, 1Y69|1|0|A|518

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1Y69|1|0|G|24
1Y69|1|0|U|25
1Y69|1|0|G|26
1Y69|1|0|G|27
1Y69|1|0|A|28
1Y69|1|0|U|29
1Y69|1|0|G|30
1Y69|1|0|C|31
*
1Y69|1|0|G|485
1Y69|1|0|U|486
1Y69|1|0|G|487
1Y69|1|0|A|488
1Y69|1|0|A|489
1Y69|1|0|A|490
1Y69|1|0|A|491
1Y69|1|0|G|492
1Y69|1|0|A|493
1Y69|1|0|A|494
1Y69|1|0|C|495
*
1Y69|1|0|G|506
1Y69|1|0|A|507
1Y69|1|0|G|508
1Y69|1|0|U|509
1Y69|1|0|G|510
1Y69|1|0|A|511
1Y69|1|0|A|512
1Y69|1|0|A|513
1Y69|1|0|G|514
1Y69|1|0|A|515
1Y69|1|0|G|516
1Y69|1|0|A|517
1Y69|1|0|A|518
1Y69|1|0|C|519
1Y69|1|0|C|520
1Y69|1|0|U|521
1Y69|1|0|G|522
1Y69|1|0|A|523
1Y69|1|0|A|524
1Y69|1|0|A|525
1Y69|1|0|C|526

Current chains

Chain 0

23S ribosomal RNA

Nearby chains