J3_1Y69_013

3D structure

PDB id

1Y69 (explore in PDB, NAKB, or RNA 3D Hub)

Description

RRF domain I in complex with the 50S ribosomal subunit from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.33 Å

Loop

Sequence

CCUG*CGAUAGCGCAUAGUAC*GGAAAG

Length

26 nucleotides

Bulged bases

1Y69|1|0|U|460, 1Y69|1|0|U|467

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1Y69_013 not in the Motif Atlas

Homologous match to J3_7A0S_016

Geometric discrepancy: 0.2438

The information below is about J3_7A0S_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_07616.2

Basepair signature

cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH

Number of instances in this motif group

11

Unit IDs

1Y69|1|0|C|32
1Y69|1|0|C|33
1Y69|1|0|U|34
1Y69|1|0|G|35
*
1Y69|1|0|C|457
1Y69|1|0|G|458
1Y69|1|0|A|459
1Y69|1|0|U|460
1Y69|1|0|A|461
1Y69|1|0|G|462
1Y69|1|0|C|463
1Y69|1|0|G|464
1Y69|1|0|C|465
1Y69|1|0|A|466
1Y69|1|0|U|467
1Y69|1|0|A|468
1Y69|1|0|G|469
1Y69|1|0|U|470
1Y69|1|0|A|471
1Y69|1|0|C|472
*
1Y69|1|0|G|479
1Y69|1|0|G|480
1Y69|1|0|A|481
1Y69|1|0|A|482
1Y69|1|0|A|483
1Y69|1|0|G|484

Current chains

Chain 0

23S ribosomal RNA

Nearby chains