J3_1Y69_017

3D structure

PDB id

1Y69 (explore in PDB, NAKB, or RNA 3D Hub)

Description

RRF domain I in complex with the 50S ribosomal subunit from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.33 Å

Loop

Sequence

CUG*CGGCCGUAACUAUAACGGUCCUAAGGUAG*CGAAAG

Length

38 nucleotides

Bulged bases

1Y69|1|0|A|1901, 1Y69|1|0|A|1953, 1Y69|1|0|A|1954

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1Y69|1|0|C|1825
1Y69|1|0|U|1826
1Y69|1|0|G|1827
*
1Y69|1|0|C|1888
1Y69|1|0|G|1889
1Y69|1|0|G|1890
1Y69|1|0|C|1891
1Y69|1|0|C|1892
1Y69|1|0|G|1893
1Y69|1|0|U|1894
1Y69|1|0|A|1895
1Y69|1|0|A|1896
1Y69|1|0|C|1897
1Y69|1|0|U|1898
1Y69|1|0|A|1899
1Y69|1|0|U|1900
1Y69|1|0|A|1901
1Y69|1|0|A|1902
1Y69|1|0|C|1903
1Y69|1|0|G|1904
1Y69|1|0|G|1905
1Y69|1|0|U|1906
1Y69|1|0|C|1907
1Y69|1|0|C|1908
1Y69|1|0|U|1909
1Y69|1|0|A|1910
1Y69|1|0|A|1911
1Y69|1|0|G|1912
1Y69|1|0|G|1913
1Y69|1|0|U|1914
1Y69|1|0|A|1915
1Y69|1|0|G|1916
*
1Y69|1|0|C|1950
1Y69|1|0|G|1951
1Y69|1|0|A|1952
1Y69|1|0|A|1953
1Y69|1|0|A|1954
1Y69|1|0|G|1955

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain 8

Ribosome-recycling factor

Chain U

50S ribosomal protein L27