J3_1Y69_020
3D structure
- PDB id
- 1Y69 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- RRF domain I in complex with the 50S ribosomal subunit from Deinococcus radiodurans
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.33 Å
Loop
- Sequence
- CCCAUAG*CG*UCAG
- Length
- 13 nucleotides
- Bulged bases
- 1Y69|1|9|C|14, 1Y69|1|9|U|16
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_1Y69_020 not in the Motif Atlas
- Homologous match to J3_7A0S_021
- Geometric discrepancy: 0.3341
- The information below is about J3_7A0S_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_47324.1
- Basepair signature
- cWW-F-F-tSS-F-F-cWW
- Number of instances in this motif group
- 1
Unit IDs
1Y69|1|9|C|12
1Y69|1|9|C|13
1Y69|1|9|C|14
1Y69|1|9|A|15
1Y69|1|9|U|16
1Y69|1|9|A|17
1Y69|1|9|G|18
*
1Y69|1|9|C|70
1Y69|1|9|G|71
*
1Y69|1|9|U|110
1Y69|1|9|C|111
1Y69|1|9|A|112
1Y69|1|9|G|113
Current chains
- Chain 9
- 5S ribosomal RNA
Nearby chains
- Chain 0
- Large subunit ribosomal RNA; LSU rRNA
- Chain U
- 50S ribosomal protein L27
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