J3_1Y69_021

3D structure

PDB id

1Y69 (explore in PDB, NAKB, or RNA 3D Hub)

Description

RRF domain I in complex with the 50S ribosomal subunit from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.33 Å

Loop

Sequence

UGAGCUA*UAGGA*UAACCGAA

Length

20 nucleotides

Bulged bases

1Y69|1|0|G|699, 1Y69|1|0|A|802, 1Y69|1|0|C|803, 1Y69|1|0|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1Y69|1|0|U|696
1Y69|1|0|G|697
1Y69|1|0|A|698
1Y69|1|0|G|699
1Y69|1|0|C|700
1Y69|1|0|U|701
1Y69|1|0|A|702
*
1Y69|1|0|U|786
1Y69|1|0|A|787
1Y69|1|0|G|788
1Y69|1|0|G|789
1Y69|1|0|A|790
*
1Y69|1|0|U|800
1Y69|1|0|A|801
1Y69|1|0|A|802
1Y69|1|0|C|803
1Y69|1|0|C|804
1Y69|1|0|G|805
1Y69|1|0|A|806
1Y69|1|0|A|807

Current chains

Chain 0

23S ribosomal RNA

Nearby chains