J3_1YIT_005

3D structure

PDB id

1YIT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure Of Virginiamycin M and S Bound To The 50S Ribosomal Subunit Of Haloarcula Marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CUAAUG*CAUG*CAAG

Length

14 nucleotides

Bulged bases

1YIT|1|0|U|1702

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1YIT_005 not in the Motif Atlas

Homologous match to J3_4V9F_005

Geometric discrepancy: 0.0439

The information below is about J3_4V9F_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.6

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

1YIT|1|0|C|1404
1YIT|1|0|U|1405
1YIT|1|0|A|1406
1YIT|1|0|A|1407
1YIT|1|0|U|1408
1YIT|1|0|G|1409
*
1YIT|1|0|C|1700
1YIT|1|0|A|1701
1YIT|1|0|U|1702
1YIT|1|0|G|1703
*
1YIT|1|0|C|1715
1YIT|1|0|A|1716
1YIT|1|0|A|1717
1YIT|1|0|G|1718

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain P

50S RIBOSOMAL PROTEIN L19E