J3_1YJ9_012
3D structure
- PDB id
- 1YJ9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal Structure Of The Mutant 50S Ribosomal Subunit Of Haloarcula Marismortui Containing a three residue deletion in L22
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- AC*GAUAAGC*GAUUU
- Length
- 14 nucleotides
- Bulged bases
- 1YJ9|1|0|A|70
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_1YJ9_012 not in the Motif Atlas
- Homologous match to J3_4V9F_014
- Geometric discrepancy: 0.0508
- The information below is about J3_4V9F_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_01004.1
- Basepair signature
- cWW-cWW-F-F-F-cWW-F-cWW
- Number of instances in this motif group
- 10
Unit IDs
1YJ9|1|0|A|52
1YJ9|1|0|C|53
*
1YJ9|1|0|G|66
1YJ9|1|0|A|67
1YJ9|1|0|U|68
1YJ9|1|0|A|69
1YJ9|1|0|A|70
1YJ9|1|0|G|71
1YJ9|1|0|C|72
*
1YJ9|1|0|G|105
1YJ9|1|0|A|106
1YJ9|1|0|U|107
1YJ9|1|0|U|108
1YJ9|1|0|U|109
Current chains
- Chain 0
- 23S Ribosomal RNA
Nearby chains
- Chain 1
- 50S ribosomal protein L37e
- Chain 2
- 50S ribosomal protein L39e
- Chain S
- 50S ribosomal protein L23P
- Chain V
- 50S ribosomal protein L29P
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