J3_1YJ9_018

3D structure

PDB id

1YJ9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure Of The Mutant 50S Ribosomal Subunit Of Haloarcula Marismortui Containing a three residue deletion in L22

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

UGACG*CC*GAAAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1YJ9_018 not in the Motif Atlas

Homologous match to J3_4V9F_017

Geometric discrepancy: 0.0365

The information below is about J3_4V9F_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_08594.1

Basepair signature

cWW-tSH-tHH-F-F-cWW-F-cWW

Number of instances in this motif group

6

Unit IDs

1YJ9|1|0|U|1531
1YJ9|1|0|G|1532
1YJ9|1|0|A|1533
1YJ9|1|0|C|1534
1YJ9|1|0|G|1535
*
1YJ9|1|0|C|1650
1YJ9|1|0|C|1651
*
1YJ9|1|0|G|1655
1YJ9|1|0|A|1656
1YJ9|1|0|A|1657
1YJ9|1|0|A|1658
1YJ9|1|0|A|1659
1YJ9|1|0|G|1660

Current chains

Chain 0

23S Ribosomal RNA

Nearby chains

Chain A

50S ribosomal protein L2P

Chain Z

50S ribosomal protein L37Ae