J3_1YJ9_020

3D structure

PDB id

1YJ9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure Of The Mutant 50S Ribosomal Subunit Of Haloarcula Marismortui Containing a three residue deletion in L22

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

UG*CUGCAAAGUACC*GAGGCGAAAUAGAGCA

Length

30 nucleotides

Bulged bases

1YJ9|1|0|U|510, 1YJ9|1|0|G|514

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1YJ9|1|0|U|27
1YJ9|1|0|G|28
*
1YJ9|1|0|C|480
1YJ9|1|0|U|481
1YJ9|1|0|G|482
1YJ9|1|0|C|483
1YJ9|1|0|A|484
1YJ9|1|0|A|485
1YJ9|1|0|A|486
1YJ9|1|0|G|487
1YJ9|1|0|U|488
1YJ9|1|0|A|489
1YJ9|1|0|C|490
1YJ9|1|0|C|491
*
1YJ9|1|0|G|501
1YJ9|1|0|A|502
1YJ9|1|0|G|503
1YJ9|1|0|G|504
1YJ9|1|0|C|505
1YJ9|1|0|G|506
1YJ9|1|0|A|507
1YJ9|1|0|A|508
1YJ9|1|0|A|509
1YJ9|1|0|U|510
1YJ9|1|0|A|511
1YJ9|1|0|G|512
1YJ9|1|0|A|513
1YJ9|1|0|G|514
1YJ9|1|0|C|515
1YJ9|1|0|A|516

Current chains

Chain 0

23S Ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L39e

Chain C

50S ribosomal protein L4E

Chain R

50S ribosomal protein L22P

Chain T

50S ribosomal protein L24P