J3_28UH_035

3D structure

PDB id

28UH (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome, trapped conformational ground state of SSU-h44 apical loop, with A/P- and P/E-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.06 Å

Loop

Sequence

GAAC*GUUGAU*AAUGAAC

Length

17 nucleotides

Bulged bases

28UH|1|a|U|2833, 28UH|1|a|A|2835

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

28UH|1|a|G|2812
28UH|1|a|A|2813
28UH|1|a|A|2814
28UH|1|a|C|2815
*
28UH|1|a|G|2831
28UH|1|a|U|2832
28UH|1|a|U|2833
28UH|1|a|G|2834
28UH|1|a|A|2835
28UH|1|a|U|2836
*
28UH|1|a|A|2882
28UH|1|a|A|2883
28UH|1|a|U|2884
28UH|1|a|G|2885
28UH|1|a|A|2886
28UH|1|a|A|2887
28UH|1|a|C|2888

Current chains

Chain a

23S rRNA

Nearby chains

Chain d

Large ribosomal subunit protein uL3

Chain m

Large ribosomal subunit protein bL17

Chain r

Large ribosomal subunit protein uL22

Chain z

Large ribosomal subunit protein bL32