J3_28UI_001

3D structure

PDB id

28UI (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome, trapped conformational excited state of SSU-h44 apical loop, with A- and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

GC*GGAAUAU*AGC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_28UI_001 not in the Motif Atlas

Geometric match to J3_8B0X_001

Geometric discrepancy: 0.0476

The information below is about J3_8B0X_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_58657.3

Basepair signature

cWW-cWW-cSW-cWW-F-F-F-F

Number of instances in this motif group

6

Unit IDs

28UI|1|A|G|46
28UI|1|A|C|47
*
28UI|1|A|G|361
28UI|1|A|G|362
28UI|1|A|A|363
28UI|1|A|A|364
28UI|1|A|U|365
28UI|1|A|A|366
28UI|1|A|U|367
*
28UI|1|A|A|393
28UI|1|A|G|394
28UI|1|A|C|395

Current chains

Chain A

16S rRNA

Nearby chains

Chain L

Small ribosomal subunit protein uS12

Chain P

Small ribosomal subunit protein bS16