J3_28UI_008
3D structure
- PDB id
- 28UI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S ribosome, trapped conformational excited state of SSU-h44 apical loop, with A- and P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.1 Å
Loop
- Sequence
- UGGA*UAC*GGAA
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_28UI_008 not in the Motif Atlas
- Homologous match to J3_6CZR_019
- Geometric discrepancy: 0.1528
- The information below is about J3_6CZR_019
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
28UI|1|A|U|943
28UI|1|A|G|944
28UI|1|A|G|945
28UI|1|A|A|946
*
28UI|1|A|U|1235
28UI|1|A|A|1236
28UI|1|A|C|1237
*
28UI|1|A|G|1337
28UI|1|A|G|1338
28UI|1|A|A|1339
28UI|1|A|A|1340
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain G
- Small ribosomal subunit protein uS7
- Chain I
- Small ribosomal subunit protein uS9
- Chain M
- Small ribosomal subunit protein uS13
- Chain Z
- Transfer RNA; tRNA
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