J3_28UJ_012

3D structure

PDB id

28UJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome, trapped conformational excited state of SSU-h44 apical loop, with A/P- and P/E-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.16 Å

Loop

Sequence

GAAG*UGUGCC*GGAAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

28UJ|1|A|G|1003
28UJ|1|A|A|1004
28UJ|1|A|A|1005
28UJ|1|A|G|1006
*
28UJ|1|A|U|1023
28UJ|1|A|G|1024
28UJ|1|A|U|1025
28UJ|1|A|G|1026
28UJ|1|A|C|1027
28UJ|1|A|C|1028
*
28UJ|1|A|G|1033
28UJ|1|A|G|1034
28UJ|1|A|A|1035
28UJ|1|A|A|1036
28UJ|1|A|C|1037

Current chains

Chain A

16S rRNA

Nearby chains

Chain C

Small ribosomal subunit protein uS3

Chain N

Small ribosomal subunit protein uS14