J3_28UL_001

3D structure

PDB id

28UL (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome, conformational ground state mutation in SSU-h41, with A/P- and P/E-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

GC*GGAAUAU*AGC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_28UL_001 not in the Motif Atlas

Geometric match to J3_8B0X_001

Geometric discrepancy: 0.0444

The information below is about J3_8B0X_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_58657.3

Basepair signature

cWW-cWW-cSW-cWW-F-F-F-F

Number of instances in this motif group

6

Unit IDs

28UL|1|A|G|46
28UL|1|A|C|47
*
28UL|1|A|G|361
28UL|1|A|G|362
28UL|1|A|A|363
28UL|1|A|A|364
28UL|1|A|U|365
28UL|1|A|A|366
28UL|1|A|U|367
*
28UL|1|A|A|393
28UL|1|A|G|394
28UL|1|A|C|395

Current chains

Chain A

16S rRNA

Nearby chains

Chain L

Small ribosomal subunit protein uS12

Chain P

Small ribosomal subunit protein bS16