J3_28UL_036

3D structure

PDB id

28UL (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome, conformational ground state mutation in SSU-h41, with A/P- and P/E-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

GCCGUAG*CGC*GGAAC

Length

15 nucleotides

Bulged bases

28UL|1|b|U|14, 28UL|1|b|A|108

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

28UL|1|b|G|10
28UL|1|b|C|11
28UL|1|b|C|12
28UL|1|b|G|13
28UL|1|b|U|14
28UL|1|b|A|15
28UL|1|b|G|16
*
28UL|1|b|C|68
28UL|1|b|G|69
28UL|1|b|C|70
*
28UL|1|b|G|106
28UL|1|b|G|107
28UL|1|b|A|108
28UL|1|b|A|109
28UL|1|b|C|110

Current chains

Chain b

5S rRNA

Nearby chains

Chain a

Large subunit ribosomal RNA; LSU rRNA

Chain n

Large ribosomal subunit protein uL18

Chain u

Large ribosomal subunit protein bL25

Chain v

Large ribosomal subunit protein bL27