J3_28UM_009
3D structure
- PDB id
- 28UM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S ribosome, conformational excited state mutation in SSU-h41, with A- and P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.15 Å
Loop
- Sequence
- UUUAAUUC*GAAGAACCUUAC*GGCUA
- Length
- 25 nucleotides
- Bulged bases
- 28UM|1|A|A|975, 28UM|1|A|G|976, 28UM|1|A|A|978
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_28UM_009 not in the Motif Atlas
- Geometric match to J3_8B0X_007
- Geometric discrepancy: 0.0318
- The information below is about J3_8B0X_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_88451.3
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
28UM|1|A|U|955
28UM|1|A|U|956
28UM|1|A|U|957
28UM|1|A|A|958
28UM|1|A|A|959
28UM|1|A|U|960
28UM|1|A|U|961
28UM|1|A|C|962
*
28UM|1|A|G|973
28UM|1|A|A|974
28UM|1|A|A|975
28UM|1|A|G|976
28UM|1|A|A|977
28UM|1|A|A|978
28UM|1|A|C|979
28UM|1|A|C|980
28UM|1|A|U|981
28UM|1|A|U|982
28UM|1|A|A|983
28UM|1|A|C|984
*
28UM|1|A|G|1221
28UM|1|A|G|1222
28UM|1|A|C|1223
28UM|1|A|U|1224
28UM|1|A|A|1225
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain I
- Small ribosomal subunit protein uS9
- Chain J
- Small ribosomal subunit protein uS10
- Chain M
- Small ribosomal subunit protein uS13
- Chain N
- Small ribosomal subunit protein uS14
- Chain S
- Small ribosomal subunit protein uS19
- Chain Y
- Transfer RNA; tRNA
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