J3_28UM_022
3D structure
- PDB id
- 28UM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S ribosome, conformational excited state mutation in SSU-h41, with A- and P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.15 Å
Loop
- Sequence
- UGAUCUA*UGG*CAAA
- Length
- 14 nucleotides
- Bulged bases
- 28UM|1|a|U|686, 28UM|1|a|A|792, 28UM|1|a|A|793
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_28UM_022 not in the Motif Atlas
- Homologous match to J3_7A0S_004
- Geometric discrepancy: 0.1705
- The information below is about J3_7A0S_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_46658.3
- Basepair signature
- cWW-tWH-cWW-tSW-F-F-cWW
- Number of instances in this motif group
- 11
Unit IDs
28UM|1|a|U|683
28UM|1|a|G|684
28UM|1|a|A|685
28UM|1|a|U|686
28UM|1|a|C|687
28UM|1|a|U|688
28UM|1|a|A|689
*
28UM|1|a|U|773
28UM|1|a|G|774
28UM|1|a|G|775
*
28UM|1|a|C|791
28UM|1|a|A|792
28UM|1|a|A|793
28UM|1|a|A|794
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain 1
- Large ribosomal subunit protein bL34
- Chain c
- Large ribosomal subunit protein uL2
- Chain e
- Large ribosomal subunit protein uL4
Coloring options: