J3_28UM_034

3D structure

PDB id

28UM (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome, conformational excited state mutation in SSU-h41, with A- and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.15 Å

Loop

Sequence

GAAC*GUUGAU*AAUGAAC

Length

17 nucleotides

Bulged bases

28UM|1|a|U|2833, 28UM|1|a|A|2835

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

28UM|1|a|G|2812
28UM|1|a|A|2813
28UM|1|a|A|2814
28UM|1|a|C|2815
*
28UM|1|a|G|2831
28UM|1|a|U|2832
28UM|1|a|U|2833
28UM|1|a|G|2834
28UM|1|a|A|2835
28UM|1|a|U|2836
*
28UM|1|a|A|2882
28UM|1|a|A|2883
28UM|1|a|U|2884
28UM|1|a|G|2885
28UM|1|a|A|2886
28UM|1|a|A|2887
28UM|1|a|C|2888

Current chains

Chain a

23S rRNA

Nearby chains

Chain d

Large ribosomal subunit protein uL3

Chain m

Large ribosomal subunit protein bL17

Chain r

Large ribosomal subunit protein uL22

Chain z

Large ribosomal subunit protein bL32