J3_28UN_008

3D structure

PDB id

28UN (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome, conformational excited state mutation in SSU-h41, with A/P- and P/E-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

UGGA*UAC*GGAA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_28UN_008 not in the Motif Atlas

Homologous match to J3_6CZR_019

Geometric discrepancy: 0.1508

The information below is about J3_6CZR_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

28UN|1|A|U|943
28UN|1|A|G|944
28UN|1|A|G|945
28UN|1|A|A|946
*
28UN|1|A|U|1235
28UN|1|A|A|1236
28UN|1|A|C|1237
*
28UN|1|A|G|1337
28UN|1|A|G|1338
28UN|1|A|A|1339
28UN|1|A|A|1340

Current chains

Chain A

16S rRNA

Nearby chains

Chain I

Small ribosomal subunit protein uS9

Chain M

Small ribosomal subunit protein uS13

Chain Z

Transfer RNA; tRNA