J3_28ZU_001

3D structure

PDB id

28ZU (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 48S PIC with Kozak mRNA and eIF1A W70A mutant

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AG*CGC(A2M)AAU*(A2M)GU

Length

12 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_28ZU_001 not in the Motif Atlas

Homologous match to J3_9H3G_028

Geometric discrepancy: 0.1051

The information below is about J3_9H3G_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_58657.4

Basepair signature

cWW-cWW-cSW-cWW-F-F-F-F

Number of instances in this motif group

7

Unit IDs

28ZU|1|S2|A|40
28ZU|1|S2|G|41
*
28ZU|1|S2|C|481
28ZU|1|S2|G|482
28ZU|1|S2|C|483
28ZU|1|S2|A2M|484
28ZU|1|S2|A|485
28ZU|1|S2|A|486
28ZU|1|S2|U|487
*
28ZU|1|S2|A2M|512
28ZU|1|S2|G|513
28ZU|1|S2|U|514

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SJ

40S ribosomal protein S9

Chain SX

40S ribosomal protein S23