J3_2D3O_001
3D structure
- PDB id
- 2D3O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Ribosome Binding Domain of the Trigger Factor on the 50S ribosomal subunit from D. radiodurans
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.35 Å
Loop
- Sequence
- ACGCGAUUACCU*AAGC*GAUGU
- Length
- 21 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_2D3O_001 not in the Motif Atlas
- Homologous match to J3_4WF9_001
- Geometric discrepancy: 0.4262
- The information below is about J3_4WF9_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_47707.1
- Basepair signature
- cWW-F-F-F-F-F-cWW-F-cWW-F-F-cSH-cSH-cWW-F
- Number of instances in this motif group
- 1
Unit IDs
2D3O|1|0|A|55
2D3O|1|0|C|56
2D3O|1|0|G|57
2D3O|1|0|C|58
2D3O|1|0|G|59
2D3O|1|0|A|60
2D3O|1|0|U|61
2D3O|1|0|U|62
2D3O|1|0|A|63
2D3O|1|0|C|64
2D3O|1|0|C|65
2D3O|1|0|U|66
*
2D3O|1|0|A|72
2D3O|1|0|A|73
2D3O|1|0|G|74
2D3O|1|0|C|75
*
2D3O|1|0|G|108
2D3O|1|0|A|109
2D3O|1|0|U|110
2D3O|1|0|G|111
2D3O|1|0|U|112
Current chains
- Chain 0
- 23S RIBOSOMAL RNA
Nearby chains
- Chain R
- 50S RIBOSOMAL PROTEIN L23
- Chain W
- 50S RIBOSOMAL PROTEIN L29
Coloring options: