J3_2D3O_007

3D structure

PDB id

2D3O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Ribosome Binding Domain of the Trigger Factor on the 50S ribosomal subunit from D. radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

AUUG*CUAAC*GGACCGU

Length

16 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

2D3O|1|0|A|2073
2D3O|1|0|U|2074
2D3O|1|0|U|2075
2D3O|1|0|G|2076
*
2D3O|1|0|C|2179
2D3O|1|0|U|2180
2D3O|1|0|A|2181
2D3O|1|0|A|2182
2D3O|1|0|C|2183
*
2D3O|1|0|G|2202
2D3O|1|0|G|2203
2D3O|1|0|A|2204
2D3O|1|0|C|2205
2D3O|1|0|C|2206
2D3O|1|0|G|2207
2D3O|1|0|U|2208

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains