J3_2D3O_013

3D structure

PDB id

2D3O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Ribosome Binding Domain of the Trigger Factor on the 50S ribosomal subunit from D. radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

CGAGCUUAAGU*AACGGAGGCGGAG*CGAGUCCGAAUAGGGCGGCAUUAG

Length

48 nucleotides

Bulged bases

2D3O|1|0|U|616, 2D3O|1|0|G|631, 2D3O|1|0|A|648, 2D3O|1|0|A|654, 2D3O|1|0|U|666, 2D3O|1|0|U|667

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

2D3O|1|0|C|611
2D3O|1|0|G|612
2D3O|1|0|A|613
2D3O|1|0|G|614
2D3O|1|0|C|615
2D3O|1|0|U|616
2D3O|1|0|U|617
2D3O|1|0|A|618
2D3O|1|0|A|619
2D3O|1|0|G|620
2D3O|1|0|U|621
*
2D3O|1|0|A|627
2D3O|1|0|A|628
2D3O|1|0|C|629
2D3O|1|0|G|630
2D3O|1|0|G|631
2D3O|1|0|A|632
2D3O|1|0|G|633
2D3O|1|0|G|634
2D3O|1|0|C|635
2D3O|1|0|G|636
2D3O|1|0|G|637
2D3O|1|0|A|638
2D3O|1|0|G|639
*
2D3O|1|0|C|646
2D3O|1|0|G|647
2D3O|1|0|A|648
2D3O|1|0|G|649
2D3O|1|0|U|650
2D3O|1|0|C|651
2D3O|1|0|C|652
2D3O|1|0|G|653
2D3O|1|0|A|654
2D3O|1|0|A|655
2D3O|1|0|U|656
2D3O|1|0|A|657
2D3O|1|0|G|658
2D3O|1|0|G|659
2D3O|1|0|G|660
2D3O|1|0|C|661
2D3O|1|0|G|662
2D3O|1|0|G|663
2D3O|1|0|C|664
2D3O|1|0|A|665
2D3O|1|0|U|666
2D3O|1|0|U|667
2D3O|1|0|A|668
2D3O|1|0|G|669

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains