J3_2D3O_016

3D structure

PDB id

2D3O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Ribosome Binding Domain of the Trigger Factor on the 50S ribosomal subunit from D. radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

CUG*CGGCCGUAACUAUAACGGUCCUAAGGUAG*CGAAAG

Length

38 nucleotides

Bulged bases

2D3O|1|0|U|1894, 2D3O|1|0|A|1895, 2D3O|1|0|A|1954

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

2D3O|1|0|C|1825
2D3O|1|0|U|1826
2D3O|1|0|G|1827
*
2D3O|1|0|C|1888
2D3O|1|0|G|1889
2D3O|1|0|G|1890
2D3O|1|0|C|1891
2D3O|1|0|C|1892
2D3O|1|0|G|1893
2D3O|1|0|U|1894
2D3O|1|0|A|1895
2D3O|1|0|A|1896
2D3O|1|0|C|1897
2D3O|1|0|U|1898
2D3O|1|0|A|1899
2D3O|1|0|U|1900
2D3O|1|0|A|1901
2D3O|1|0|A|1902
2D3O|1|0|C|1903
2D3O|1|0|G|1904
2D3O|1|0|G|1905
2D3O|1|0|U|1906
2D3O|1|0|C|1907
2D3O|1|0|C|1908
2D3O|1|0|U|1909
2D3O|1|0|A|1910
2D3O|1|0|A|1911
2D3O|1|0|G|1912
2D3O|1|0|G|1913
2D3O|1|0|U|1914
2D3O|1|0|A|1915
2D3O|1|0|G|1916
*
2D3O|1|0|C|1950
2D3O|1|0|G|1951
2D3O|1|0|A|1952
2D3O|1|0|A|1953
2D3O|1|0|A|1954
2D3O|1|0|G|1955

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains