J3_2D3O_019

3D structure

PDB id

2D3O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Ribosome Binding Domain of the Trigger Factor on the 50S ribosomal subunit from D. radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

CCUG*CGAUAGCGCAUAGUAC*GGAAAG

Length

26 nucleotides

Bulged bases

2D3O|1|0|U|34, 2D3O|1|0|U|460, 2D3O|1|0|U|467

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_2D3O_019 not in the Motif Atlas

Homologous match to J3_7A0S_016

Geometric discrepancy: 0.2111

The information below is about J3_7A0S_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_07616.2

Basepair signature

cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH

Number of instances in this motif group

11

Unit IDs

2D3O|1|0|C|32
2D3O|1|0|C|33
2D3O|1|0|U|34
2D3O|1|0|G|35
*
2D3O|1|0|C|457
2D3O|1|0|G|458
2D3O|1|0|A|459
2D3O|1|0|U|460
2D3O|1|0|A|461
2D3O|1|0|G|462
2D3O|1|0|C|463
2D3O|1|0|G|464
2D3O|1|0|C|465
2D3O|1|0|A|466
2D3O|1|0|U|467
2D3O|1|0|A|468
2D3O|1|0|G|469
2D3O|1|0|U|470
2D3O|1|0|A|471
2D3O|1|0|C|472
*
2D3O|1|0|G|479
2D3O|1|0|G|480
2D3O|1|0|A|481
2D3O|1|0|A|482
2D3O|1|0|A|483
2D3O|1|0|G|484

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain R

50S RIBOSOMAL PROTEIN L23

Chain S

50S RIBOSOMAL PROTEIN L24