J3_2E5L_006

3D structure

PDB id

2E5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

A snapshot of the 30S ribosomal subunit capturing mRNA via the Shine- Dalgarno interaction

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GAAC*GGUGC*GAGC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

2E5L|1|A|G|1003|||A
2E5L|1|A|A|1004
2E5L|1|A|A|1005
2E5L|1|A|C|1006
*
2E5L|1|A|G|1023
2E5L|1|A|G|1024
2E5L|1|A|U|1025
2E5L|1|A|G|1026
2E5L|1|A|C|1027
*
2E5L|1|A|G|1034
2E5L|1|A|A|1035
2E5L|1|A|G|1036
2E5L|1|A|C|1037

Current chains

Chain A

16S ribosomal RNA

Nearby chains