J3_2HHH_017
3D structure
- PDB id
- 2HHH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of kasugamycin bound to the 30S ribosomal subunit
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.35 Å
Loop
- Sequence
- UG*UGUU*GCAA
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_2HHH_017 not in the Motif Atlas
- Homologous match to J3_4LFB_017
- Geometric discrepancy: 0.1482
- The information below is about J3_4LFB_017
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_79369.1
- Basepair signature
- cWW-cWW-tSS-F-F-cWW-F
- Number of instances in this motif group
- 1
Unit IDs
2HHH|1|A|U|1056
2HHH|1|A|G|1057
*
2HHH|1|A|U|1066
2HHH|1|A|G|1067
2HHH|1|A|U|1068
2HHH|1|A|U|1069
*
2HHH|1|A|G|1082
2HHH|1|A|C|1083
2HHH|1|A|A|1084
2HHH|1|A|A|1085
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain B
- 30S ribosomal protein S2
- Chain E
- 30S ribosomal protein S5
Coloring options: