J3_2HHH_018
3D structure
- PDB id
- 2HHH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of kasugamycin bound to the 30S ribosomal subunit
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.35 Å
Loop
- Sequence
- CGC*GGACUGC*GAGGAAGGAG
- Length
- 20 nucleotides
- Bulged bases
- 2HHH|1|A|A|1165
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_2HHH_018 not in the Motif Atlas
- Homologous match to J3_5J7L_054
- Geometric discrepancy: 0.1135
- The information below is about J3_5J7L_054
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17791.2
- Basepair signature
- cWW-F-cHW-cWW-tWH-cWW-F-tSW-tWS-cSH-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
2HHH|1|A|C|1099
2HHH|1|A|G|1100
2HHH|1|A|C|1101
*
2HHH|1|A|G|1138
2HHH|1|A|G|1139
2HHH|1|A|A|1140
2HHH|1|A|C|1141
2HHH|1|A|U|1142
2HHH|1|A|G|1143
2HHH|1|A|C|1144
*
2HHH|1|A|G|1157
2HHH|1|A|A|1158
2HHH|1|A|G|1159
2HHH|1|A|G|1160
2HHH|1|A|A|1161
2HHH|1|A|A|1162
2HHH|1|A|G|1163
2HHH|1|A|G|1164
2HHH|1|A|A|1165
2HHH|1|A|G|1166
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain B
- 30S ribosomal protein S2
- Chain G
- 30S ribosomal protein S7
- Chain I
- 30S ribosomal protein S9
- Chain J
- 30S ribosomal protein S10
- Chain N
- 30S ribosomal protein S14
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