3D structure

PDB id
2HO7 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Pre-cleavage state of the Thermoanaerobacter tengcongensis glmS ribozyme bound to glucose-6-phosphate
Experimental method
X-RAY DIFFRACTION
Resolution
2.9 Å

Loop

Sequence
GG*UGAC*GAGACAUC
Length
14 nucleotides
Bulged bases
2HO7|1|B|G|55
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_2HO7_001 not in the Motif Atlas
Geometric match to J3_3G9C_002
Geometric discrepancy: 0.2989
The information below is about J3_3G9C_002
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_60873.1
Basepair signature
cWW-cSH-tWW-F-tHS-F-cWW-tWS-cWW
Number of instances in this motif group
1

Unit IDs

2HO7|1|A|G|7
2HO7|1|A|G|8
*
2HO7|1|B|U|33
2HO7|1|B|G|34
2HO7|1|B|A|35
2HO7|1|B|C|36
*
2HO7|1|B|G|53
2HO7|1|B|A|54
2HO7|1|B|G|55
2HO7|1|B|A|56
2HO7|1|B|C|57
2HO7|1|B|A|58
2HO7|1|B|U|59
2HO7|1|B|C|60

Current chains

Chain A
glmS ribozyme substrate RNA
Chain B
glmS ribozyme RNA

Nearby chains

No other chains within 10Å

Coloring options:


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