J3_2O44_002

3D structure

PDB id

2O44 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of 23S rRNA of the large ribosomal subunit from Deinococcus radiodurans in complex with the macrolide josamycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GUGAGCUA*UAGGA*UAACCGAAC

Length

22 nucleotides

Bulged bases

2O44|1|A|G|699, 2O44|1|A|A|802, 2O44|1|A|C|803, 2O44|1|A|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

2O44|1|A|G|695
2O44|1|A|U|696
2O44|1|A|G|697
2O44|1|A|A|698
2O44|1|A|G|699
2O44|1|A|C|700
2O44|1|A|U|701
2O44|1|A|A|702
*
2O44|1|A|U|786
2O44|1|A|A|787
2O44|1|A|G|788
2O44|1|A|G|789
2O44|1|A|A|790
*
2O44|1|A|U|800
2O44|1|A|A|801
2O44|1|A|A|802
2O44|1|A|C|803
2O44|1|A|C|804
2O44|1|A|G|805
2O44|1|A|A|806
2O44|1|A|A|807
2O44|1|A|C|808

Current chains

Chain A

23S rRNA

Nearby chains