J3_2O44_016

3D structure

PDB id

2O44 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of 23S rRNA of the large ribosomal subunit from Deinococcus radiodurans in complex with the macrolide josamycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

AUG*UUGGUACGCUCAAGGGCG*CACAUGCCUCAGACGUAUCGGGAGCUUCCUCGGAAGCGAAGU

Length

63 nucleotides

Bulged bases

2O44|1|A|U|1459, 2O44|1|A|C|1489, 2O44|1|A|C|1497, 2O44|1|A|C|1524, 2O44|1|A|A|1525, 2O44|1|A|U|1526, 2O44|1|A|C|1550, 2O44|1|A|U|1551

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

2O44|1|A|A|1458
2O44|1|A|U|1459
2O44|1|A|G|1460
*
2O44|1|A|U|1481
2O44|1|A|U|1482
2O44|1|A|G|1483
2O44|1|A|G|1484
2O44|1|A|U|1485
2O44|1|A|A|1486
2O44|1|A|C|1487
2O44|1|A|G|1488
2O44|1|A|C|1489
2O44|1|A|U|1490
2O44|1|A|C|1491
2O44|1|A|A|1492
2O44|1|A|A|1493
2O44|1|A|G|1494
2O44|1|A|G|1495
2O44|1|A|G|1496
2O44|1|A|C|1497
2O44|1|A|G|1498
*
2O44|1|A|C|1522
2O44|1|A|A|1523
2O44|1|A|C|1524
2O44|1|A|A|1525
2O44|1|A|U|1526
2O44|1|A|G|1527
2O44|1|A|C|1528
2O44|1|A|C|1529
2O44|1|A|U|1530
2O44|1|A|C|1531
2O44|1|A|A|1532
2O44|1|A|G|1533
2O44|1|A|A|1534
2O44|1|A|C|1535
2O44|1|A|G|1536
2O44|1|A|U|1537
2O44|1|A|A|1538
2O44|1|A|U|1539
2O44|1|A|C|1540
2O44|1|A|G|1541
2O44|1|A|G|1542
2O44|1|A|G|1543
2O44|1|A|A|1544
2O44|1|A|G|1545
2O44|1|A|C|1546
2O44|1|A|U|1547
2O44|1|A|U|1548
2O44|1|A|C|1549
2O44|1|A|C|1550
2O44|1|A|U|1551
2O44|1|A|C|1552
2O44|1|A|G|1553
2O44|1|A|G|1554
2O44|1|A|A|1555
2O44|1|A|A|1556
2O44|1|A|G|1557
2O44|1|A|C|1558
2O44|1|A|G|1559
2O44|1|A|A|1560
2O44|1|A|A|1561
2O44|1|A|G|1562
2O44|1|A|U|1563

Current chains

Chain A

23S rRNA

Nearby chains