J3_2O44_017

3D structure

PDB id

2O44 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of 23S rRNA of the large ribosomal subunit from Deinococcus radiodurans in complex with the macrolide josamycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CUGC*GCGGCCGUAACUAUAACGGUCCUAAGGUAG*CGAAAG

Length

40 nucleotides

Bulged bases

2O44|1|A|U|1909, 2O44|1|A|A|1954

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

2O44|1|A|C|1825
2O44|1|A|U|1826
2O44|1|A|G|1827
2O44|1|A|C|1828
*
2O44|1|A|G|1887
2O44|1|A|C|1888
2O44|1|A|G|1889
2O44|1|A|G|1890
2O44|1|A|C|1891
2O44|1|A|C|1892
2O44|1|A|G|1893
2O44|1|A|U|1894
2O44|1|A|A|1895
2O44|1|A|A|1896
2O44|1|A|C|1897
2O44|1|A|U|1898
2O44|1|A|A|1899
2O44|1|A|U|1900
2O44|1|A|A|1901
2O44|1|A|A|1902
2O44|1|A|C|1903
2O44|1|A|G|1904
2O44|1|A|G|1905
2O44|1|A|U|1906
2O44|1|A|C|1907
2O44|1|A|C|1908
2O44|1|A|U|1909
2O44|1|A|A|1910
2O44|1|A|A|1911
2O44|1|A|G|1912
2O44|1|A|G|1913
2O44|1|A|U|1914
2O44|1|A|A|1915
2O44|1|A|G|1916
*
2O44|1|A|C|1950
2O44|1|A|G|1951
2O44|1|A|A|1952
2O44|1|A|A|1953
2O44|1|A|A|1954
2O44|1|A|G|1955

Current chains

Chain A

23S rRNA

Nearby chains