J3_2O44_018

3D structure

PDB id

2O44 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of 23S rRNA of the large ribosomal subunit from Deinococcus radiodurans in complex with the macrolide josamycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GGUAGAAGGUGGCUUGAC*GGG*CGGGC

Length

26 nucleotides

Bulged bases

2O44|1|A|A|2312, 2O44|1|A|G|2313

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

2O44|1|A|G|2309
2O44|1|A|G|2310
2O44|1|A|U|2311
2O44|1|A|A|2312
2O44|1|A|G|2313
2O44|1|A|A|2314
2O44|1|A|A|2315
2O44|1|A|G|2316
2O44|1|A|G|2317
2O44|1|A|U|2318
2O44|1|A|G|2319
2O44|1|A|G|2320
2O44|1|A|C|2321
2O44|1|A|U|2322
2O44|1|A|U|2323
2O44|1|A|G|2324
2O44|1|A|A|2325
2O44|1|A|C|2326
*
2O44|1|A|G|2349
2O44|1|A|G|2350
2O44|1|A|G|2351
*
2O44|1|A|C|2360
2O44|1|A|G|2361
2O44|1|A|G|2362
2O44|1|A|G|2363
2O44|1|A|C|2364

Current chains

Chain A

23S rRNA

Nearby chains