J3_2O45_011

3D structure

PDB id

2O45 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 23S rRNA of the large ribosomal subunit from Deinococcus Radiodurans in complex with the macrolide RU-69874

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

GC*GUGAAAAGAACC*GGAGUGAAAGAGAACC

Length

30 nucleotides

Bulged bases

2O45|1|A|G|514, 2O45|1|A|A|518

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

2O45|1|A|G|30
2O45|1|A|C|31
*
2O45|1|A|G|485
2O45|1|A|U|486
2O45|1|A|G|487
2O45|1|A|A|488
2O45|1|A|A|489
2O45|1|A|A|490
2O45|1|A|A|491
2O45|1|A|G|492
2O45|1|A|A|493
2O45|1|A|A|494
2O45|1|A|C|495
2O45|1|A|C|496
*
2O45|1|A|G|505
2O45|1|A|G|506
2O45|1|A|A|507
2O45|1|A|G|508
2O45|1|A|U|509
2O45|1|A|G|510
2O45|1|A|A|511
2O45|1|A|A|512
2O45|1|A|A|513
2O45|1|A|G|514
2O45|1|A|A|515
2O45|1|A|G|516
2O45|1|A|A|517
2O45|1|A|A|518
2O45|1|A|C|519
2O45|1|A|C|520

Current chains

Chain A

23S rRNA

Nearby chains